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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002055Structural maintenance of chromosomes flexible hinge domain containing 1. (1782 aa)    
Predicted Functional Partners:
scaf11
RING-type domain-containing protein.
   
    0.744
ENSACLP00000016057
AT hook containing transcription factor 1.
   
  
 0.706
lrif1
Uncharacterized protein.
    
 
 0.660
ENSACLP00000001939
Methyltransferase like 4; Belongs to the MT-A70-like family.
   
  
 0.556
LOC113025474
Uncharacterized protein.
   
    0.518
mvb12a
Uncharacterized protein.
    
   0.485
nudcd1
NudC domain containing 1.
    
   0.477
ENSACLP00000018312
Baculoviral IAP repeat containing 6.
   
   0.461
nup133
Nucleoporin 133.
   
  
 0.445
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
   
    0.426
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.