STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002061RNA binding motif protein 19. (899 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.996
LOC113016769
PWP2 small subunit processome component.
   
 
 0.994
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
   0.991
bysl
Bystin-like.
   
 
 0.975
rbm28
RNA binding motif protein 28.
   
 
0.974
wdr36
WD repeat domain 36.
   
 
 0.970
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.968
nop9
Uncharacterized protein.
   
 
 0.959
utp4
UTP4 small subunit processome component.
   
   0.958
ENSACLP00000031857
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
 
 0.954
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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