STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113034525Clathrin interactor 1a. (640 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 0.997
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
    
 
 0.936
ENSACLP00000034552
Epidermal growth factor receptor pathway substrate 15.
    
 0.892
LOC113010886
Uncharacterized protein.
    
 0.871
ENSACLP00000015691
Epidermal growth factor receptor pathway substrate 15 like 1.
    
 0.867
eps15l1
Epidermal growth factor receptor pathway substrate 15-like 1a.
    
 0.867
LOC113026105
Tyrosine-protein kinase receptor.
    
  0.841
igf1r
Tyrosine-protein kinase receptor.
    
  0.841
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 
 0.809
ENSACLP00000002940
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.777
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.