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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lamp2Lysosomal-associated membrane protein 2. (467 aa)    
Predicted Functional Partners:
LOC113007997
Lysosomal associated membrane protein 1b.
  
0.991
lamp1
Lysosomal associated membrane protein 1a.
  
0.991
cd63
Tetraspanin.
    
 0.871
ENSACLP00000038786
Uncharacterized protein.
     
0.851
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.702
nprl3
NPR3-like, GATOR1 complex subunit.
    
 
 0.683
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.680
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.678
ENSACLP00000010488
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 
 0.664
kptn
Kaptin (actin binding protein).
    
 
 0.663
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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