STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
usp25Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family. (1169 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.944
ENSACLP00000010589
Tumor protein p53 binding protein, 1.
   
 
 0.909
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.904
LOC113024716
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.879
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.879
RPS27A
Ribosomal protein S27a.
    
 0.868
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.868
LOC113033094
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.834
LOC113025693
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.834
LOC113025455
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.834
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (32%) [HD]