ENSACLP00000002116 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000002116

AHD domain-containing protein. (152 aa)

Predicted Functional Partners:

aff4

0.868

ENSACLP00000005889

0.858

ENSACLP00000004308

0.853

cdk9

0.849

polr2c

0.846

dmap1

0.841

eaf1

0.833

polr2j

0.817

LOC113007797

0.810

LOC113020758

0.810

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000002116	ENSACLP00000004308	ENSACLP00000002116	ENSACLP00000004308	AHD domain-containing protein.	Uncharacterized protein.	0.853
ENSACLP00000002116	ENSACLP00000005889	ENSACLP00000002116	ENSACLP00000005889	AHD domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.858
ENSACLP00000002116	LOC113007797	ENSACLP00000002116	ENSACLP00000030428	AHD domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.810
ENSACLP00000002116	LOC113020758	ENSACLP00000002116	ENSACLP00000033074	AHD domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.810
ENSACLP00000002116	aff4	ENSACLP00000002116	ENSACLP00000017435	AHD domain-containing protein.	AF4/FMR2 family, member 4.	0.868
ENSACLP00000002116	cdk9	ENSACLP00000002116	ENSACLP00000007818	AHD domain-containing protein.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.849
ENSACLP00000002116	dmap1	ENSACLP00000002116	ENSACLP00000030212	AHD domain-containing protein.	DNA methyltransferase 1 associated protein 1.	0.841
ENSACLP00000002116	eaf1	ENSACLP00000002116	ENSACLP00000005529	AHD domain-containing protein.	ELL associated factor 1.	0.833
ENSACLP00000002116	polr2c	ENSACLP00000002116	ENSACLP00000007189	AHD domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.846
ENSACLP00000002116	polr2j	ENSACLP00000002116	ENSACLP00000021436	AHD domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide J.	0.817
ENSACLP00000004308	ENSACLP00000002116	ENSACLP00000004308	ENSACLP00000002116	Uncharacterized protein.	AHD domain-containing protein.	0.853
ENSACLP00000004308	ENSACLP00000005889	ENSACLP00000004308	ENSACLP00000005889	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.711
ENSACLP00000004308	LOC113007797	ENSACLP00000004308	ENSACLP00000030428	Uncharacterized protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.700
ENSACLP00000004308	LOC113020758	ENSACLP00000004308	ENSACLP00000033074	Uncharacterized protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.700
ENSACLP00000004308	aff4	ENSACLP00000004308	ENSACLP00000017435	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.704
ENSACLP00000004308	cdk9	ENSACLP00000004308	ENSACLP00000007818	Uncharacterized protein.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.976
ENSACLP00000004308	eaf1	ENSACLP00000004308	ENSACLP00000005529	Uncharacterized protein.	ELL associated factor 1.	0.955
ENSACLP00000004308	polr2c	ENSACLP00000004308	ENSACLP00000007189	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.749
ENSACLP00000004308	polr2j	ENSACLP00000004308	ENSACLP00000021436	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide J.	0.751
ENSACLP00000005889	ENSACLP00000002116	ENSACLP00000005889	ENSACLP00000002116	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	AHD domain-containing protein.	0.858