lsm11 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lsm11

LSM11, U7 small nuclear RNA associated. (334 aa)

Predicted Functional Partners:

ENSACLP00000023721

0.983

LSM10

0.979

snrpg

0.979

snrpd3

0.979

ENSACLP00000036553

0.973

ENSACLP00000025572

0.833

naa38

0.800

snrpb

0.793

LOC113030407

0.791

ENSACLP00000018002

0.782

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000018002	ENSACLP00000023721	ENSACLP00000018002	ENSACLP00000023721	Ig-like domain-containing protein.	Small nuclear ribonucleoprotein polypeptide F.	0.984
ENSACLP00000018002	ENSACLP00000025572	ENSACLP00000018002	ENSACLP00000025572	Ig-like domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.941
ENSACLP00000018002	ENSACLP00000036553	ENSACLP00000018002	ENSACLP00000036553	Ig-like domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.985
ENSACLP00000018002	LOC113030407	ENSACLP00000018002	ENSACLP00000010290	Ig-like domain-containing protein.	SLBP_RNA_bind domain-containing protein.	0.521
ENSACLP00000018002	LSM10	ENSACLP00000018002	ENSACLP00000007007	Ig-like domain-containing protein.	LSM10, U7 small nuclear RNA associated.	0.941
ENSACLP00000018002	lsm11	ENSACLP00000018002	ENSACLP00000002137	Ig-like domain-containing protein.	LSM11, U7 small nuclear RNA associated.	0.782
ENSACLP00000018002	snrpd3	ENSACLP00000018002	ENSACLP00000031392	Ig-like domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.984
ENSACLP00000018002	snrpg	ENSACLP00000018002	ENSACLP00000009255	Ig-like domain-containing protein.	Small nuclear ribonucleoprotein G.	0.981
ENSACLP00000023721	ENSACLP00000018002	ENSACLP00000023721	ENSACLP00000018002	Small nuclear ribonucleoprotein polypeptide F.	Ig-like domain-containing protein.	0.984
ENSACLP00000023721	ENSACLP00000025572	ENSACLP00000023721	ENSACLP00000025572	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSACLP00000023721	ENSACLP00000036553	ENSACLP00000023721	ENSACLP00000036553	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSACLP00000023721	LOC113030407	ENSACLP00000023721	ENSACLP00000010290	Small nuclear ribonucleoprotein polypeptide F.	SLBP_RNA_bind domain-containing protein.	0.690
ENSACLP00000023721	LSM10	ENSACLP00000023721	ENSACLP00000007007	Small nuclear ribonucleoprotein polypeptide F.	LSM10, U7 small nuclear RNA associated.	0.999
ENSACLP00000023721	lsm11	ENSACLP00000023721	ENSACLP00000002137	Small nuclear ribonucleoprotein polypeptide F.	LSM11, U7 small nuclear RNA associated.	0.983
ENSACLP00000023721	naa38	ENSACLP00000023721	ENSACLP00000013978	Small nuclear ribonucleoprotein polypeptide F.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.984
ENSACLP00000023721	snrpb	ENSACLP00000023721	ENSACLP00000021619	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.995
ENSACLP00000023721	snrpd3	ENSACLP00000023721	ENSACLP00000031392	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSACLP00000023721	snrpg	ENSACLP00000023721	ENSACLP00000009255	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
ENSACLP00000025572	ENSACLP00000018002	ENSACLP00000025572	ENSACLP00000018002	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Ig-like domain-containing protein.	0.941
ENSACLP00000025572	ENSACLP00000023721	ENSACLP00000025572	ENSACLP00000023721	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide F.	0.999