STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc1Tetratricopeptide repeat domain 1. (335 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
   
    0.798
rnf41
Ring finger protein 41.
    
   0.742
ENSACLP00000010086
Heat shock protein 4b.
    
 
 0.578
LOC113030435
Heat shock protein 4a.
    
 
 0.578
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
    0.559
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
0.534
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.509
ENSACLP00000031727
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.509
LOC113013172
MSP domain-containing protein.
    
 
 0.473
ENSACLP00000027970
Aminoacylase 1.
    
   0.457
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.