Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc1Tetratricopeptide repeat domain 1. (335 aa)    
Predicted Functional Partners:
rnf41
Ring finger protein 41.
    
   0.928
ENSACLP00000027970
Aminoacylase 1.
    
   0.849
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.847
ENSACLP00000031727
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.847
LOC113013172
MSP domain-containing protein.
    
 
 0.800
ENSACLP00000004302
BHLH domain-containing protein.
    
   0.763
LOC113010009
T-cell acute lymphocytic leukemia 1.
    
   0.763
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
 0.655
LOC113009911
SplA/ryanodine receptor domain and SOCS box containing 4a.
    
   0.640
ENSACLP00000011873
Si:ch1073-228j22.2.
    
   0.640
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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