STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl30Mitochondrial ribosomal protein L30. (160 aa)    
Predicted Functional Partners:
ENSACLP00000028949
Mitochondrial ribosomal protein L47.
   
   0.997
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.997
LOC113027054
Mitochondrial ribosomal protein L23.
   
   0.996
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.996
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.995
ENSACLP00000035858
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 0.993
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.993
mrpl13
Mitochondrial ribosomal protein L13.
   
   0.992
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.991
mrps16
Mitochondrial ribosomal protein S16.
   
 
 0.991
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.