STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGCZSarcoglycan zeta. (330 aa)    
Predicted Functional Partners:
ENSACLP00000002881
Sarcoglycan, gamma.
  
0.987
dag1
Dystroglycan 1.
    
 0.982
LOC113013494
Peptidase S72 domain-containing protein.
    
 0.982
LOC113027793
Sarcoglycan, alpha.
   
 0.978
LOC113026976
Sarcospan (Kras oncogene-associated gene).
   
 0.973
sgce
Sarcoglycan, epsilon.
   
 0.972
LOC113026976-2
Sarcospan-like.
   
 0.960
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.957
LOC113018669
Uncharacterized protein.
  
  
 
0.939
sntg1
Syntrophin, gamma 1.
   
 
 0.856
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.