Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027806SIX homeobox 3b. (279 aa)    
Predicted Functional Partners:
LOC113014940
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.704
eya4
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.704
LOC113021973
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.704
eya1
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.704
VSX2
Visual system homeobox 2.
   
  
 0.542
ENSACLP00000021174
Paired domain-containing protein.
  
  
 0.533
LOC113011745
Orthodenticle homeobox 2b.
    
 
 0.506
dlx1
Distal-less homeobox 1a.
   
  
 0.501
LOC113016048
TLE family member 2, transcriptional corepressor a.
    
 
 0.497
LOC113017016
TLE family member 2, transcriptional corepressor b.
    
 
 0.497
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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