STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002173TLR4 interactor with leucine-rich repeats. (757 aa)    
Predicted Functional Partners:
gp1bb
Glycoprotein Ib platelet subunit beta.
   
 0.856
ENSACLP00000002194
LRRCT domain-containing protein.
   
 0.846
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.714
LOC113006738
V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.
    
 
 0.656
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
    
 0.649
LOC113021365
Si:ch211-237i5.4.
   
  0.602
LOC113028165
Uncharacterized protein.
   
  0.602
LOC113010089
Vav 3 guanine nucleotide exchange factor b.
    
  0.572
ntng1
Netrin g1a.
    
  0.572
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
 0.548
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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