STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.860
chmp1b
Chromatin modifying protein 1B.
    
 
 0.860
LOC113033874
Uncharacterized protein.
    
 
 0.860
chmp2a
Charged multivesicular body protein 2A.
    
 
 0.667
LOC113021276
Peptidoglycan recognition protein 6.
      
 0.568
LOC113029160
Charged multivesicular body protein 5b.
    
 
 0.568
LOC113010793
Charged multivesicular body protein 5a.
    
 
 0.568
ENSACLP00000028937
A kinase (PRKA) anchor protein 17A.
      
 0.556
zmat3
Zinc finger, matrin-type 3.
   
    0.548
ids
Iduronate 2-sulfatase.
      
 0.533
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.