Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 
 0.932
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.894
chmp1b
Chromatin modifying protein 1B.
    
 
 0.894
LOC113033874
Uncharacterized protein.
    
 
 0.894
LOC113029160
Charged multivesicular body protein 5b.
   
 
 0.890
LOC113010793
Charged multivesicular body protein 5a.
   
 
 0.890
LOC113021276
Peptidoglycan recognition protein 6.
      
 0.811
ENSACLP00000028937
A kinase (PRKA) anchor protein 17A.
      
 0.747
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.706
ids
Iduronate 2-sulfatase.
      
 0.706
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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