STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002234NFKB activating protein. (388 aa)    
Predicted Functional Partners:
ENSACLP00000010721
SLU7 homolog, splicing factor.
   
 0.979
ENSACLP00000002722
Family with sequence similarity 32 member A.
    
 0.944
sde2
SDE2 telomere maintenance homolog (S. pombe).
    
 0.940
ENSACLP00000037635
CWC22 spliceosome associated protein homolog.
   
  0.919
DDX41
DEAD-box helicase 41.
    
  0.909
LOC113037195
Uncharacterized protein.
   
 0.901
ENSACLP00000011298
Uncharacterized protein.
   
 0.901
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.897
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.897
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.897
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.