Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113022578Uncharacterized protein. (831 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
     
  0.819
LOC113027321
Si:ch211-222n4.2.
      
 0.798
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
     
  0.783
ttll12
Tubulin tyrosine ligase-like family, member 12.
      
 0.718
lrrc58
Leucine rich repeat containing 58b.
    
 
 0.652
ENSACLP00000009054
Ribonuclease P/MRP 14 subunit.
    
  0.645
rpgr
Uncharacterized protein.
      
 0.620
LOC113016356
Retinitis pigmentosa GTPase regulator b.
      
 0.620
dcp1a
Decapping mRNA 1A.
    
 
 0.616
LOC113009769
Decapping mRNA 1B.
    
 
 0.616
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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