LOC113020073 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113020073

Prostaglandin E receptor 1b (subtype EP1). (384 aa)

Predicted Functional Partners:

LOC113033130

0.880

LOC113025585

0.867

LOC113016248

0.867

LOC113025584

0.866

LOC113014465

0.861

LOC113015699

0.860

LOC113011723

0.860

GNA14

0.860

ENSACLP00000029412

0.860

gng10

0.858

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000029412	LOC113014465	ENSACLP00000029412	ENSACLP00000034724	Guanine nucleotide binding protein (G protein), alpha 14a.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.720
ENSACLP00000029412	LOC113016248	ENSACLP00000029412	ENSACLP00000001543	Guanine nucleotide binding protein (G protein), alpha 14a.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.736
ENSACLP00000029412	LOC113020073	ENSACLP00000029412	ENSACLP00000002310	Guanine nucleotide binding protein (G protein), alpha 14a.	Prostaglandin E receptor 1b (subtype EP1).	0.860
ENSACLP00000029412	LOC113025584	ENSACLP00000029412	ENSACLP00000002181	Guanine nucleotide binding protein (G protein), alpha 14a.	Uncharacterized protein.	0.715
ENSACLP00000029412	LOC113025585	ENSACLP00000029412	ENSACLP00000001315	Guanine nucleotide binding protein (G protein), alpha 14a.	Guanine nucleotide binding protein (G protein), alpha 14.	0.703
ENSACLP00000029412	LOC113033130	ENSACLP00000029412	ENSACLP00000029308	Guanine nucleotide binding protein (G protein), alpha 14a.	Uncharacterized protein.	0.823
ENSACLP00000029412	gng10	ENSACLP00000029412	ENSACLP00000003697	Guanine nucleotide binding protein (G protein), alpha 14a.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.739
GNA14	LOC113014465	ENSACLP00000029378	ENSACLP00000034724	G protein subunit alpha 14.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.720
GNA14	LOC113016248	ENSACLP00000029378	ENSACLP00000001543	G protein subunit alpha 14.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.735
GNA14	LOC113020073	ENSACLP00000029378	ENSACLP00000002310	G protein subunit alpha 14.	Prostaglandin E receptor 1b (subtype EP1).	0.860
GNA14	LOC113025584	ENSACLP00000029378	ENSACLP00000002181	G protein subunit alpha 14.	Uncharacterized protein.	0.714
GNA14	LOC113025585	ENSACLP00000029378	ENSACLP00000001315	G protein subunit alpha 14.	Guanine nucleotide binding protein (G protein), alpha 14.	0.702
GNA14	LOC113033130	ENSACLP00000029378	ENSACLP00000029308	G protein subunit alpha 14.	Uncharacterized protein.	0.823
GNA14	gng10	ENSACLP00000029378	ENSACLP00000003697	G protein subunit alpha 14.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.739
LOC113011723	LOC113014465	ENSACLP00000014652	ENSACLP00000034724	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.720
LOC113011723	LOC113016248	ENSACLP00000014652	ENSACLP00000001543	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.736
LOC113011723	LOC113020073	ENSACLP00000014652	ENSACLP00000002310	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Prostaglandin E receptor 1b (subtype EP1).	0.860
LOC113011723	LOC113025584	ENSACLP00000014652	ENSACLP00000002181	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.827
LOC113011723	LOC113025585	ENSACLP00000014652	ENSACLP00000001315	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14.	0.821
LOC113011723	LOC113033130	ENSACLP00000014652	ENSACLP00000029308	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.829