Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
thbs2Thrombospondin 2a. (1185 aa)    
Predicted Functional Partners:
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.938
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.913
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.912
mmp9
Matrix metallopeptidase 9.
    
 0.906
ENSACLP00000002698
Integrin beta; Belongs to the integrin beta chain family.
   
 0.902
ENSACLP00000013728
Integrin beta; Belongs to the integrin beta chain family.
   
 0.902
ENSACLP00000021556
PSI domain-containing protein.
   
 0.902
LOC113010138
Integrin beta; Belongs to the integrin beta chain family.
   
 0.901
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.901
ENSACLP00000033830
Integrin beta.
   
 0.893
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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