Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113014925Spalt-like transcription factor 3b. (1252 aa)    
Predicted Functional Partners:
LOC113025878
POU domain protein.
   
 0.890
bsx
Brain-specific homeobox.
   
 0.664
LOC113011262
GATA zinc finger domain containing 2A.
    
 0.657
gatad2a
GATA zinc finger domain containing 2Ab.
    
 0.657
gatad2b
GATA zinc finger domain containing 2B.
    
 0.657
LOC113027513
Retinoblastoma binding protein 4, like.
    
  0.634
LOC113011815
Retinoblastoma binding protein 4.
    
  0.634
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
  0.634
LOC113010065
Uncharacterized protein.
   
  0.612
LOC113026104
Methyl-CpG binding domain protein 2.
   
  0.612
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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