RAB15 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RAB15

Uncharacterized protein. (211 aa)

Predicted Functional Partners:

MICALL1

0.896

ENSACLP00000032760

0.856

LOC113033143

0.843

LOC113025713

0.843

ENSACLP00000035250

0.842

eif3l

0.840

exoc4

0.834

wdr41

0.828

sqstm1

0.825

exoc5

0.822

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000032760	RAB15	ENSACLP00000032760	ENSACLP00000002373	Zgc:100846.	Uncharacterized protein.	0.856
ENSACLP00000032760	sqstm1	ENSACLP00000032760	ENSACLP00000027648	Zgc:100846.	Sequestosome 1.	0.670
ENSACLP00000032760	wdr41	ENSACLP00000032760	ENSACLP00000038654	Zgc:100846.	WD repeat domain 41.	0.998
ENSACLP00000035250	RAB15	ENSACLP00000035250	ENSACLP00000002373	Rab interacting lysosomal protein-like 2.	Uncharacterized protein.	0.842
LOC113025713	RAB15	ENSACLP00000019869	ENSACLP00000002373	Uncharacterized protein.	Uncharacterized protein.	0.843
LOC113025713	exoc4	ENSACLP00000019869	ENSACLP00000036467	Uncharacterized protein.	Exocyst complex component 4.	0.441
LOC113025713	exoc5	ENSACLP00000019869	ENSACLP00000034219	Uncharacterized protein.	Exocyst complex component 5.	0.443
LOC113033143	RAB15	ENSACLP00000009271	ENSACLP00000002373	Uncharacterized protein.	Uncharacterized protein.	0.843
LOC113033143	exoc4	ENSACLP00000009271	ENSACLP00000036467	Uncharacterized protein.	Exocyst complex component 4.	0.441
LOC113033143	exoc5	ENSACLP00000009271	ENSACLP00000034219	Uncharacterized protein.	Exocyst complex component 5.	0.443
MICALL1	RAB15	ENSACLP00000023666	ENSACLP00000002373	MICAL like 1.	Uncharacterized protein.	0.896
RAB15	ENSACLP00000032760	ENSACLP00000002373	ENSACLP00000032760	Uncharacterized protein.	Zgc:100846.	0.856
RAB15	ENSACLP00000035250	ENSACLP00000002373	ENSACLP00000035250	Uncharacterized protein.	Rab interacting lysosomal protein-like 2.	0.842
RAB15	LOC113025713	ENSACLP00000002373	ENSACLP00000019869	Uncharacterized protein.	Uncharacterized protein.	0.843
RAB15	LOC113033143	ENSACLP00000002373	ENSACLP00000009271	Uncharacterized protein.	Uncharacterized protein.	0.843
RAB15	MICALL1	ENSACLP00000002373	ENSACLP00000023666	Uncharacterized protein.	MICAL like 1.	0.896
RAB15	eif3l	ENSACLP00000002373	ENSACLP00000031880	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.840
RAB15	exoc4	ENSACLP00000002373	ENSACLP00000036467	Uncharacterized protein.	Exocyst complex component 4.	0.834
RAB15	exoc5	ENSACLP00000002373	ENSACLP00000034219	Uncharacterized protein.	Exocyst complex component 5.	0.822
RAB15	sqstm1	ENSACLP00000002373	ENSACLP00000027648	Uncharacterized protein.	Sequestosome 1.	0.825