Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PTPRDProtein tyrosine phosphatase receptor type D. (1480 aa)    
Predicted Functional Partners:
SLITRK1
SLIT and NTRK like family member 1.
    
 0.917
slitrk3
SLIT and NTRK-like family, member 3a.
    
 0.914
ENSACLP00000027049
SLIT and NTRK-like family, member 2.
    
 0.913
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.908
IL1RAP
Interleukin 1 receptor accessory protein.
    
 0.889
LOC113011806
SLIT and NTRK-like family, member 3b.
    
  0.880
LOC113014539
Uncharacterized protein.
    
  0.843
ENSACLP00000028392
SLIT and NTRK-like family, member 4.
    
 0.814
LOC113008404
SLIT and NTRK-like family, member 5b.
    
  0.811
slitrk6
SLIT and NTRK-like family, member 6.
    
  0.811
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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