LOC113031339 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113031339

Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)

Predicted Functional Partners:

LOC113032461

0.968

LOC113008537

0.968

csnk2a2

0.968

LOC113023052

0.968

rrp7a

0.958

supt16h

0.956

ENSACLP00000020446

0.955

nol6

0.950

wdr36

0.892

pcgf5

0.883

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000020446	LOC113008537	ENSACLP00000020446	ENSACLP00000008183	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.932
ENSACLP00000020446	LOC113023052	ENSACLP00000020446	ENSACLP00000039359	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.932
ENSACLP00000020446	LOC113031339	ENSACLP00000020446	ENSACLP00000002404	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.955
ENSACLP00000020446	LOC113032461	ENSACLP00000020446	ENSACLP00000001766	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Zgc:86598; Belongs to the protein kinase superfamily.	0.932
ENSACLP00000020446	csnk2a2	ENSACLP00000020446	ENSACLP00000030326	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.932
ENSACLP00000020446	supt16h	ENSACLP00000020446	ENSACLP00000035186	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	SPT16 homolog, facilitates chromatin remodeling subunit.	0.999
LOC113008537	ENSACLP00000020446	ENSACLP00000008183	ENSACLP00000020446	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.932
LOC113008537	LOC113023052	ENSACLP00000008183	ENSACLP00000039359	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.816
LOC113008537	LOC113031339	ENSACLP00000008183	ENSACLP00000002404	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.968
LOC113008537	LOC113032461	ENSACLP00000008183	ENSACLP00000001766	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.816
LOC113008537	csnk2a2	ENSACLP00000008183	ENSACLP00000030326	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.816
LOC113008537	nol6	ENSACLP00000008183	ENSACLP00000009029	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Nucleolar protein 6.	0.887
LOC113008537	pcgf5	ENSACLP00000008183	ENSACLP00000002044	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Polycomb group ring finger 5a.	0.778
LOC113008537	rrp7a	ENSACLP00000008183	ENSACLP00000024650	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	Ribosomal RNA processing 7 homolog A.	0.902
LOC113008537	supt16h	ENSACLP00000008183	ENSACLP00000035186	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.927
LOC113023052	ENSACLP00000020446	ENSACLP00000039359	ENSACLP00000020446	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.932
LOC113023052	LOC113008537	ENSACLP00000039359	ENSACLP00000008183	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.816
LOC113023052	LOC113031339	ENSACLP00000039359	ENSACLP00000002404	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.968
LOC113023052	LOC113032461	ENSACLP00000039359	ENSACLP00000001766	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.816
LOC113023052	csnk2a2	ENSACLP00000039359	ENSACLP00000030326	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.816

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About