Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX3ALX homeobox 3. (367 aa)    
Predicted Functional Partners:
ENSACLP00000033765
Aristaless related homeobox a.
   
 
 0.912
LOC113033730
Orthopedia homeobox b.
   
  
 0.874
OTP
Orthopedia homeobox.
   
  
 0.874
uncx
UNC homeobox.
   
  
 0.856
LOC113024530
Unc4.1 homeobox (C. elegans).
   
  
 0.856
LHX3
LIM homeobox 3.
    
 0.832
lhx4
LIM homeobox 4.
    
 0.832
LOC113034698
LIM domain binding 1a.
    
 0.782
ldb2
LIM domain binding 2a.
    
 0.782
LOC113023769
LIM-domain binding 1b.
    
 0.782
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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