STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gucd1Guanylyl cyclase domain containing 1. (226 aa)    
Predicted Functional Partners:
dctn4
Dynactin 4.
      
 0.730
upb1
Ureidopropionase, beta.
      
 0.714
clu
Clusterin; Belongs to the clusterin family.
      
 0.702
dmgdh
Dimethylglycine dehydrogenase.
      
 0.658
ngly1
N-glycanase 1.
   
   0.655
LOC113012254
AFG1 like ATPase a.
      
 0.629
afg1l
AFG1 like ATPase b.
      
 0.629
ENSACLP00000014386
SEC63 homolog, protein translocation regulator.
      
 0.610
ostm1
Osteoclastogenesis associated transmembrane protein 1.
      
 0.607
ENSACLP00000000401
Forkhead box N4.
      
 0.605
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.