Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdm8PR domain containing 8b. (692 aa)    
Predicted Functional Partners:
bhlhe22
Basic helix-loop-helix family, member e22.
   
 
 0.724
PRDM6
PR/SET domain 6.
      
 0.610
cfap299
Cilia and flagella associated protein 299.
      
 0.608
ENSACLP00000016720
Uncharacterized protein.
    
 0.578
ENSACLP00000016727
DH domain-containing protein.
    
 0.578
SETD2
SET domain containing 2, histone lysine methyltransferase.
    
 0.537
ENSACLP00000026500
Zinc finger protein.
    
 
 0.513
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
      
 0.498
LOC113015008
Hippocalcin like 4.
      
 0.496
LOC113015339
Uncharacterized protein.
      
 0.495
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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