Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ENSACLP00000002483Sosondowah ankyrin repeat domain family d. (337 aa)    
Predicted Functional Partners:
fhl3
Four and a half LIM domains 3a.
    
 0.690
LOC113027310
Transmembrane protein 119b.
    
 
 0.675
LOC113018609
Uncharacterized protein.
      
 0.662
drc7
Uncharacterized protein.
   
 
 0.653
arhgap45
Rho GTPase activating protein 45b.
     
 0.615
traf7
TNF receptor-associated factor 7.
    
  0.601
ENSACLP00000016360
Myosin IF; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.591
GRTP1
Growth hormone regulated TBC protein 1b.
    
 
 0.571
RASAL1
RAS protein activator like 1.
      
 0.549
ENSACLP00000009532
Ras association domain family member 4a.
      
 0.535
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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