STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036806Peptidoglycan recognition protein 5. (167 aa)    
Predicted Functional Partners:
LOC113023986
Uncharacterized protein.
   
 
 0.925
LOC113021887
Phosphatidylinositol glycan anchor biosynthesis, class U.
     
 0.677
PIGU
Phosphatidylinositol glycan anchor biosynthesis class U.
     
 0.677
pus1
Pseudouridine synthase 1.
     
  0.659
sntg1
Syntrophin, gamma 1.
      
 0.653
ENSACLP00000032289
Syntrophin, gamma 2.
      
 0.653
ENSACLP00000007985
Si:ch73-263o4.3.
   
  0.644
SDS
Serine dehydratase.
   
  0.644
LOC113035303
PALP domain-containing protein.
   
  0.644
LOC113012553
Serine dehydratase-like.
   
  0.644
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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