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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf38bPre-mRNA processing factor 38B. (461 aa)    
Predicted Functional Partners:
ENSACLP00000015402
Ubiquitin-like domain-containing protein.
    
   0.875
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 
 0.857
pnn
Pinin, desmosome associated protein.
   
    0.836
ENSACLP00000009605
Ubiquitin B.
    
   0.831
LOC113030103
Uncharacterized protein.
    
   0.831
LOC113037567
RNA binding motif protein 25b.
   
  
 0.767
ENSACLP00000040817
RNA binding motif protein 25a.
   
  
 0.767
ENSACLP00000003838
Uncharacterized protein.
   
  
 0.765
prpf4b
Pre-mRNA processing factor 4Bb.
   
    0.745
srsf11
Serine and arginine rich splicing factor 11.
   
   0.683
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.