Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf38bPre-mRNA processing factor 38B. (461 aa)    
Predicted Functional Partners:
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 
 0.901
prpf38a
Pre-mRNA processing factor 38A.
   
 
  0.876
pnn
Pinin, desmosome associated protein.
   
    0.830
ENSACLP00000025413
Zinc finger CCCH-type containing 18.
   
   0.824
LOC113037567
RNA binding motif protein 25b.
   
  
 0.776
ENSACLP00000040817
RNA binding motif protein 25a.
   
  
 0.776
ENSACLP00000013586
Uncharacterized protein.
   
 
 0.771
ENSACLP00000018994
LUC7-like (S. cerevisiae).
   
 
 0.771
srsf11
Serine and arginine rich splicing factor 11.
   
 
 0.743
LOC113011292
RRM domain-containing protein.
   
 
 0.743
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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