STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029982Uncharacterized protein. (1366 aa)    
Predicted Functional Partners:
pald1
Phosphatase domain containing paladin 1a.
      
 0.609
ccbe1
Collagen and calcium binding EGF domains 1.
      
 0.525
gdf15
TGF_BETA_2 domain-containing protein.
      
 0.522
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
   
 0.515
ENSACLP00000008180
Poly [ADP-ribose] polymerase.
      
 0.506
thbs2
Thrombospondin 2a.
   
  0.501
ENSACLP00000002714
Thrombospondin 1a.
   
  0.501
LOC113006633
Thrombospondin 1b.
   
  0.501
pofut2
Protein O-fucosyltransferase 2.
     
 0.498
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
     
 0.492
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (28%) [HD]