Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113034084Sushi domain containing 1. (906 aa)    
Predicted Functional Partners:
ccdc115
Coiled-coil domain containing 115.
    
 
 0.733
pum3
Pumilio RNA-binding family member 3.
      
 0.720
tdrd3
Tudor domain containing 3.
    
 
 0.715
rchy1
Ring finger and CHY zinc finger domain containing 1.
      
 0.708
ap5m1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
    
 
 0.704
slc46a2
Solute carrier family 46 member 2.
    
 
 0.694
sh3bp2
SH3-domain binding protein 2.
      
 0.692
hspa4l
Heat shock protein 4 like.
    
 
 0.687
LOC113032924
Potassium channel, subfamily V, member 2b; Belongs to the potassium channel family.
    
 
 0.677
LOC113027371
Potassium channel, subfamily V, member 2a; Belongs to the potassium channel family.
    
 
 0.664
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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