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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou2f1POU domain protein. (717 aa)    
Predicted Functional Partners:
pou2af1
Uncharacterized protein.
    
 
 0.759
sp1
Sp1 transcription factor.
    
  0.739
snapc4
Uncharacterized protein.
    
  0.729
ENSACLP00000032770
Zinc finger protein 143b.
    
  0.664
LOC113021131
E1A binding protein p300 b.
    
 0.653
LOC113027597
E1A binding protein p300 a.
    
 0.653
gtf2b
General transcription factor IIB.
    
 0.652
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
  0.634
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.624
ENSACLP00000018137
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
    
 0.611
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.