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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113030687Glutamate receptor, metabotropic 5a. (1207 aa)    
Predicted Functional Partners:
LOC113033109
Homer scaffold protein 1b.
    
 0.907
homer2
Homer scaffold protein 2.
    
  0.849
HOMER1
Homer scaffold protein 1.
    
  0.848
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.847
LOC113011723
Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).
    
 0.842
LOC113033130
Uncharacterized protein.
    
 0.842
LOC113015525
Uncharacterized protein; Belongs to the peptidase S1 family.
    
  0.836
GNAZ
G protein subunit alpha z.
    
  0.834
LOC113013301
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
  0.833
AGAP2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
  0.827
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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