Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113012167Uncharacterized protein. (642 aa)    
Predicted Functional Partners:
LOC113030278
Janus kinase and microtubule interacting protein 2.
      
 0.654
nedd4
NEDD4 E3 ubiquitin protein ligase a.
    
   0.609
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
   0.609
tnfaip8l3
Tumor necrosis factor, alpha-induced protein 8-like 3.
      
 0.589
ENSACLP00000026549
Syntaxin binding protein 4.
    
   0.516
ENSACLP00000018117
Uncharacterized protein.
    
 0.508
fam241a
Family with sequence similarity 241 member A.
    
 
 0.499
dexi
Dexi homolog (mouse).
      
 0.492
ENSACLP00000035083
Coiled-coil domain containing 59.
      
 0.491
ENSACLP00000030841
Uncharacterized protein.
      
 0.490
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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