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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002580RING-type domain-containing protein. (101 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
   
  0.740
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.705
ENSACLP00000010589
Tumor protein p53 binding protein, 1.
    
 0.673
LOC113008023
BRCA1 associated RING domain 1.
    
 0.651
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.643
trip12
Thyroid hormone receptor interactor 12.
    
 0.617
uba3
Ubiquitin-like modifier activating enzyme 3.
    
 0.594
LOC113018914
NEDD8 ubiquitin like modifier.
    
  0.587
ENSACLP00000029713
Ubiquitin-like domain-containing protein.
    
  0.587
fut8
Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.
     
 0.586
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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