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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002583Uncharacterized protein. (72 aa)    
Predicted Functional Partners:
ENSACLP00000007224
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
   
   0.720
yipf5
Protein YIPF.
   
 
 0.584
mrps21
Mitochondrial ribosomal protein S21.
   
    0.562
ENSACLP00000000024
Selenoprotein S.
   
 
 0.561
yipf4
Protein YIPF.
   
 
 0.537
ENSACLP00000011342
Protein kish; Involved in the early part of the secretory pathway.
   
   0.513
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
    
 
 0.461
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
    
 
 0.461
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.