Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fsip1Uncharacterized protein. (413 aa)    
Predicted Functional Partners:
prdm4
PR domain containing 4.
    
 
 0.542
LOC113006461
Zinc finger protein 395b.
      
 0.511
LOC113027123
Zinc finger protein 395a.
      
 0.511
phc3
Uncharacterized protein.
  
 
  0.492
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.488
gpr176
G protein-coupled receptor 176.
      
 0.478
LOC113030228
E74-like factor 2a (ets domain transcription factor).
      
 0.473
elf2
E74-like factor 2b (ets domain transcription factor).
      
 0.473
tmem185a
Transmembrane protein 185.
      
 0.472
CLHC1
Clathrin heavy chain linker domain containing 1.
  
 
  0.452
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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