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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cachd1Cache domain containing 1. (1306 aa)    
Predicted Functional Partners:
ENSACLP00000003329
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
    
 0.817
LOC113020868
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
    
 0.817
ENSACLP00000001316
Calcium channel, voltage-dependent, beta 2a.
    
 0.740
ENSACLP00000001444
Calcium channel, voltage-dependent, beta 1 subunit.
    
 0.740
LOC113015995
Calcium channel, voltage-dependent, beta 4b subunit.
    
 0.740
ENSACLP00000004953
Calcium channel, voltage-dependent, beta 3b.
    
 0.740
LOC113010862
Calcium channel, voltage-dependent, beta 2b.
    
 0.740
LOC113007715
Calcium channel, voltage-dependent, beta 4a subunit.
    
 0.740
tmem259
Transmembrane protein 259.
      
 0.577
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
      
 0.554
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.