Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sympkSymplekin. (1221 aa)    
Predicted Functional Partners:
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.999
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
WDR33
WD repeat domain 33.
    
 0.999
LOC113024099
FIP1 like 1b (S. cerevisiae).
   
 0.998
ENSACLP00000001068
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.995
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.995
ENSACLP00000021431
Cleavage and polyadenylation specific factor 3.
   
 0.995
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.995
ENSACLP00000000691
CID domain-containing protein.
    
 0.987
ENSACLP00000000705
Uncharacterized protein.
    
 0.987
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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