myod1 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

myod1

Myogenic factor. (299 aa)

Predicted Functional Partners:

tbpl1

0.873

TCF4

0.855

LOC113010171

0.855

tcf12

0.855

LOC113016192

0.855

ENSACLP00000029906

0.841

ENSACLP00000013216

0.807

ENSACLP00000024319

0.807

ENSACLP00000026452

0.807

LOC113021131

0.801

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000013216	ENSACLP00000024319	ENSACLP00000013216	ENSACLP00000024319	TATA box binding protein.	TATA box binding protein like 2.	0.871
ENSACLP00000013216	LOC113021131	ENSACLP00000013216	ENSACLP00000021110	TATA box binding protein.	E1A binding protein p300 b.	0.605
ENSACLP00000013216	myod1	ENSACLP00000013216	ENSACLP00000002653	TATA box binding protein.	Myogenic factor.	0.807
ENSACLP00000013216	tbpl1	ENSACLP00000013216	ENSACLP00000015674	TATA box binding protein.	TBP-like 1.	0.893
ENSACLP00000024319	ENSACLP00000013216	ENSACLP00000024319	ENSACLP00000013216	TATA box binding protein like 2.	TATA box binding protein.	0.871
ENSACLP00000024319	ENSACLP00000026452	ENSACLP00000024319	ENSACLP00000026452	TATA box binding protein like 2.	Uncharacterized protein.	0.871
ENSACLP00000024319	LOC113021131	ENSACLP00000024319	ENSACLP00000021110	TATA box binding protein like 2.	E1A binding protein p300 b.	0.605
ENSACLP00000024319	myod1	ENSACLP00000024319	ENSACLP00000002653	TATA box binding protein like 2.	Myogenic factor.	0.807
ENSACLP00000024319	tbpl1	ENSACLP00000024319	ENSACLP00000015674	TATA box binding protein like 2.	TBP-like 1.	0.894
ENSACLP00000026452	ENSACLP00000024319	ENSACLP00000026452	ENSACLP00000024319	Uncharacterized protein.	TATA box binding protein like 2.	0.871
ENSACLP00000026452	LOC113021131	ENSACLP00000026452	ENSACLP00000021110	Uncharacterized protein.	E1A binding protein p300 b.	0.605
ENSACLP00000026452	myod1	ENSACLP00000026452	ENSACLP00000002653	Uncharacterized protein.	Myogenic factor.	0.807
ENSACLP00000026452	tbpl1	ENSACLP00000026452	ENSACLP00000015674	Uncharacterized protein.	TBP-like 1.	0.893
ENSACLP00000029906	LOC113010171	ENSACLP00000029906	ENSACLP00000003928	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 3a.	0.833
ENSACLP00000029906	LOC113016192	ENSACLP00000029906	ENSACLP00000034425	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 3b.	0.833
ENSACLP00000029906	LOC113021131	ENSACLP00000029906	ENSACLP00000021110	Inhibitor of DNA binding 1, HLH protein.	E1A binding protein p300 b.	0.474
ENSACLP00000029906	TCF4	ENSACLP00000029906	ENSACLP00000002243	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 4.	0.833
ENSACLP00000029906	myod1	ENSACLP00000029906	ENSACLP00000002653	Inhibitor of DNA binding 1, HLH protein.	Myogenic factor.	0.841
ENSACLP00000029906	tcf12	ENSACLP00000029906	ENSACLP00000005006	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 12.	0.833
LOC113010171	ENSACLP00000029906	ENSACLP00000003928	ENSACLP00000029906	Transcription factor 3a.	Inhibitor of DNA binding 1, HLH protein.	0.833