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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myod1Myogenic factor. (299 aa)    
Predicted Functional Partners:
tbpl1
TBP-like 1.
    
 0.833
TCF4
Transcription factor 4.
    
 0.810
LOC113010171
Transcription factor 3a.
    
 0.810
tcf12
Transcription factor 12.
    
 0.810
LOC113016192
Transcription factor 3b.
    
 0.810
LOC113026641
BHLH domain-containing protein.
    
 0.809
ENSACLP00000007060
Myocyte enhancer factor 2b.
    
 0.701
ENSACLP00000029906
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.686
LOC113021131
E1A binding protein p300 b.
    
 
 0.673
LOC113027597
E1A binding protein p300 a.
    
 
 0.673
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.