Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcdh19Protocadherin 19. (1089 aa)    
Predicted Functional Partners:
stxbp1
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.655
eno4
Enolase 4.
      
 0.600
LOC113032865
Sodium channel, voltage-gated, type I, beta a.
      
 0.512
ENSACLP00000001125
Four-jointed box kinase 1.
   
  0.507
ENSACLP00000034458
Uncharacterized protein.
      
 0.505
CDKL5
Cyclin dependent kinase like 5.
      
 0.487
LOC113020320
Cyclin-dependent kinase-like 5.
      
 0.487
cyfip2
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.482
PCDH20
Protocadherin 20.
    
  0.457
LOC113030789
Gamma-aminobutyric acid (GABA) A receptor, alpha 1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 
 0.445
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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