Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002672AlkB homolog 6. (232 aa)    
Predicted Functional Partners:
med29
Mediator complex subunit 29.
    
 
 0.883
ENSACLP00000026406
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.821
alkbh7
AlkB homolog 7.
   
  
 0.771
alkbh4
AlkB homolog 4, lysine demthylase.
      
 0.737
rsu1
Ras suppressor protein 1.
      
 0.735
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.718
vps51
VPS51 subunit of GARP complex.
      
 0.712
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
      
 0.661
ENSACLP00000025760
Bromodomain containing 7.
      
 0.654
LOC113022928
SET domain and mariner transposase fusion gene.
      
 0.610
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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