Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
raver2Ribonucleoprotein, PTB-binding 2. (880 aa)    
Predicted Functional Partners:
ENSACLP00000022178
CCR4-NOT transcription complex, subunit 11.
   
   0.963
cnot10
CCR4-NOT transcription complex, subunit 10.
    
   0.934
ENSACLP00000003233
Polypyrimidine tract binding protein 2b.
   
 0.872
PTBP2
Polypyrimidine tract binding protein 2a.
   
 0.872
ENSACLP00000010713
Polypyrimidine tract binding protein 1a.
   
 0.872
PTBP3
Polypyrimidine tract binding protein 3.
   
 0.872
ENSACLP00000031507
Uncharacterized protein.
   
 0.872
LOC113006604
Growth arrest and DNA damage inducible beta.
    
   0.865
LOC113037131
Ribosomal_L7Ae domain-containing protein.
    
   0.865
cnot7
CCR4-NOT transcription complex, subunit 7.
    
 
 0.848
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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