Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ikIK cytokine. (555 aa)    
Predicted Functional Partners:
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.996
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.995
mfap1
Microfibril associated protein 1.
   
 0.982
LOC113024232
SMU1 DNA replication regulator and spliceosomal factor b.
   
 0.979
xab2
XPA binding protein 2.
   
  0.967
SNIP1
Smad nuclear interacting protein 1.
    
   0.965
ZNF830
Zinc finger protein 830.
    
  0.963
rnf113a
Ring finger protein 113A.
    
  0.963
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.956
ENSACLP00000029759
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
   0.952
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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