ENSACLP00000002713 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000002713

Glutamate receptor, ionotropic, kainate 1a. (827 aa)

Predicted Functional Partners:

LOC113014774

0.822

grik4

0.822

grik5

0.821

itfg1

0.633

LOC113026893

0.633

ENSACLP00000012724

0.573

grin1

0.573

GRIK2

0.570

LOC113037170

0.570

grin3b

0.561

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000002713	ENSACLP00000012724	ENSACLP00000002713	ENSACLP00000012724	Glutamate receptor, ionotropic, kainate 1a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.573
ENSACLP00000002713	GRIK2	ENSACLP00000002713	ENSACLP00000009485	Glutamate receptor, ionotropic, kainate 1a.	Glutamate ionotropic receptor kainate type subunit 2.	0.570
ENSACLP00000002713	LOC113014774	ENSACLP00000002713	ENSACLP00000015987	Glutamate receptor, ionotropic, kainate 1a.	Uncharacterized protein.	0.822
ENSACLP00000002713	LOC113026893	ENSACLP00000002713	ENSACLP00000037814	Glutamate receptor, ionotropic, kainate 1a.	Neuropilin (NRP) and tolloid (TLL)-like 2b.	0.633
ENSACLP00000002713	LOC113037170	ENSACLP00000002713	ENSACLP00000031892	Glutamate receptor, ionotropic, kainate 1a.	Uncharacterized protein.	0.570
ENSACLP00000002713	grik4	ENSACLP00000002713	ENSACLP00000029136	Glutamate receptor, ionotropic, kainate 1a.	Glutamate receptor, ionotropic, kainate 4.	0.822
ENSACLP00000002713	grik5	ENSACLP00000002713	ENSACLP00000038802	Glutamate receptor, ionotropic, kainate 1a.	Glutamate receptor, ionotropic, kainate 5.	0.821
ENSACLP00000002713	grin1	ENSACLP00000002713	ENSACLP00000040298	Glutamate receptor, ionotropic, kainate 1a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.573
ENSACLP00000002713	grin3b	ENSACLP00000002713	ENSACLP00000029086	Glutamate receptor, ionotropic, kainate 1a.	Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Bb; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.561
ENSACLP00000002713	itfg1	ENSACLP00000002713	ENSACLP00000031536	Glutamate receptor, ionotropic, kainate 1a.	Neuropilin (NRP) and tolloid (TLL)-like 2b.	0.633
ENSACLP00000012724	ENSACLP00000002713	ENSACLP00000012724	ENSACLP00000002713	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate receptor, ionotropic, kainate 1a.	0.573
ENSACLP00000012724	GRIK2	ENSACLP00000012724	ENSACLP00000009485	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate ionotropic receptor kainate type subunit 2.	0.573
ENSACLP00000012724	LOC113014774	ENSACLP00000012724	ENSACLP00000015987	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Uncharacterized protein.	0.570
ENSACLP00000012724	LOC113037170	ENSACLP00000012724	ENSACLP00000031892	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Uncharacterized protein.	0.573
ENSACLP00000012724	grik4	ENSACLP00000012724	ENSACLP00000029136	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate receptor, ionotropic, kainate 4.	0.570
ENSACLP00000012724	grik5	ENSACLP00000012724	ENSACLP00000038802	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate receptor, ionotropic, kainate 5.	0.570
ENSACLP00000012724	grin3b	ENSACLP00000012724	ENSACLP00000029086	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Bb; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.966
GRIK2	ENSACLP00000002713	ENSACLP00000009485	ENSACLP00000002713	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate receptor, ionotropic, kainate 1a.	0.570
GRIK2	ENSACLP00000012724	ENSACLP00000009485	ENSACLP00000012724	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.573
GRIK2	LOC113014774	ENSACLP00000009485	ENSACLP00000015987	Glutamate ionotropic receptor kainate type subunit 2.	Uncharacterized protein.	0.823