Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACLP00000002713Glutamate receptor, ionotropic, kainate 1a. (827 aa)    
Predicted Functional Partners:
LOC113014774
Uncharacterized protein.
    
 0.872
grik4
Glutamate receptor, ionotropic, kainate 4.
    
 0.872
grik5
Glutamate receptor, ionotropic, kainate 5.
    
 0.872
ENSACLP00000012724
Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.
   
 0.634
nme9
NME/NM23 family member 8; Belongs to the NDK family.
   
   0.634
grin1
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.634
ak9
Adenylate kinase 9.
   
   0.622
sumo1
Small ubiquitin-related modifier.
    
 
 0.615
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.614
ccdc113
DUF4201 domain-containing protein.
   
 
 0.603
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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