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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002725Titin-cap (telethonin). (203 aa)    
Predicted Functional Partners:
myoz1
Uncharacterized protein.
   
 
 0.750
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.667
myot
Myotilin.
   
  
 0.607
ENSACLP00000038177
Myosin binding protein C, cardiac.
   
 0.600
ENSACLP00000029266
Nebulin.
   
 
 0.597
vim
Vimentin like; Belongs to the intermediate filament family.
   
 
 0.593
LOC113014939
Uncharacterized protein; Belongs to the intermediate filament family.
   
 
 0.581
lmna
Lamin A; Belongs to the intermediate filament family.
   
 
 0.581
naglu
N-acetylglucosaminidase, alpha.
      
 0.577
ENSACLP00000021289
LIM zinc-binding domain-containing protein.
   
 
 0.563
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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