STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl54Mitochondrial ribosomal protein L54. (138 aa)    
Predicted Functional Partners:
LOC113027054
Mitochondrial ribosomal protein L23.
   
 
 0.987
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.983
mrpl27
Mitochondrial ribosomal protein L27.
   
 
 0.981
mrps16
Mitochondrial ribosomal protein S16.
   
   0.980
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.974
mrpl14
Mitochondrial ribosomal protein L14.
   
   0.972
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.970
ENSACLP00000028949
Mitochondrial ribosomal protein L47.
   
 
 0.964
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.964
mrpl43
Mitochondrial ribosomal protein L43.
   
 
 0.960
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.