Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113017690BTB domain-containing protein. (633 aa)    
Predicted Functional Partners:
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.645
LOC113030788
Gamma-aminobutyric acid (GABA) A receptor, alpha 6b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.612
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
      
 0.608
ndufs2
NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.
      
 0.607
LOC113022844
Ubiquinol-cytochrome c reductase core protein 1.
      
 0.607
chmp2a
Charged multivesicular body protein 2A.
      
 0.604
ENSACLP00000035637
UBX domain-containing protein 7.
    
  0.586
bbs9
Bardet-Biedl syndrome 9.
    
 0.566
ttc8
Tetratricopeptide repeat domain 8.
    
 0.536
ENSACLP00000019213
Bardet-Biedl syndrome 7.
    
 0.522
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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