Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssx2ipSynovial sarcoma, X breakpoint 2 interacting protein b. (583 aa)    
Predicted Functional Partners:
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
  0.883
ENSACLP00000003584
Uncharacterized protein.
    
  0.883
LOC113010680
Synovial sarcoma, X breakpoint 2 interacting protein a.
     
  0.872
ACTN4
Actinin alpha 4.
     
  0.848
actn3
Actinin alpha 3b.
     
  0.848
LOC113034931
Actinin, alpha 2b.
     
  0.848
actn1
Actinin, alpha 1.
     
  0.848
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.679
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.630
exd3
Exonuclease 3'-5' domain containing 3.
    
 
 0.453
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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