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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssx2ipSynovial sarcoma, X breakpoint 2 interacting protein b. (583 aa)    
Predicted Functional Partners:
LOC113010680
Synovial sarcoma, X breakpoint 2 interacting protein a.
  
  
 
0.852
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
  0.842
ENSACLP00000003584
Uncharacterized protein.
    
  0.842
ACTN4
Actinin alpha 4.
     
 0.831
actn1
Actinin, alpha 1.
     
 0.831
actn3
Actinin alpha 3b.
     
 0.801
LOC113034931
Actinin, alpha 2b.
     
 0.801
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.715
alkbh7
AlkB homolog 7.
 
   
  0.681
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.544
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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