Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002769Si:dkey-28n18.9. (311 aa)    
Predicted Functional Partners:
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
     
  0.872
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
     
  0.872
ENSACLP00000016397
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.766
snx7
Sorting nexin 7.
   
 0.721
ENSACLP00000004883
Uncharacterized protein.
   
 0.721
snx8
Sorting nexin 8a.
   
 0.721
ENSACLP00000018910
Sorting nexin 1b.
   
 0.721
LOC113009483
PX domain-containing protein.
   
 0.721
LOC113019040
Uncharacterized protein.
   
 0.721
LOC113019041
Uncharacterized protein.
   
 0.721
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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