Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zc3h10Zinc finger CCCH-type containing 10. (552 aa)    
Predicted Functional Partners:
gpatch4
G patch domain containing 4.
    
   0.791
nfya
Nuclear transcription factor Y, alpha, like.
    
   0.779
LOC113034576
Ribosomal protein L26.
   
   0.764
LOC113015129
Ribosomal protein L30.
   
   0.738
LOC113015129-2
60S ribosomal protein L30.
   
   0.738
bcdin3d
BCDIN3 domain containing.
   
  
 0.717
UHRF2
Ubiquitin like with PHD and ring finger domains 2.
      
 0.696
ENSACLP00000037106
Ubiquitin-like with PHD and ring finger domains 1.
      
 0.696
LOC113021831
Uncharacterized protein.
   
 
 0.673
LOC113014004
RNA binding motif protein 39b.
   
 
 0.673
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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