Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
srrdSRR1 domain containing. (289 aa)    
Predicted Functional Partners:
rmnd5b
Required for meiotic nuclear division 5 homolog B.
    
   0.734
HDGFL3
HDGF like 3.
      
 0.715
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
      
 0.712
asphd2
Aspartate beta-hydroxylase domain containing 2.
      
 0.673
ENSACLP00000009733
Aspartate beta-hydroxylase domain containing 1.
      
 0.673
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.656
ENSACLP00000020087
Muskelin 1, intracellular mediator containing kelch motifs.
    
   0.641
LOC113012080
RAB11 family interacting protein 5a (class I).
      
 0.636
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
      
 0.628
LOC113031926
WD repeat domain 26a.
    
   0.617
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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